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Software Developer (m/f/d)
Heidelberg
Aktualität: 15.04.2025
Anzeigeninhalt:
15.04.2025, Deutsches Krebsforschungszentrum (DKFZ)
Heidelberg
Software Developer (m/f/d)
Aufgaben:
We are looking for a software developer to work at the interface of the two in-house developed open-source applications WESkit (https://gitlab.com/one-touch-pipeline/weskit) and OTP (https://gitlab.com/one-touch-pipeline/otp).
WESkit is a Workflow Execution Service (https://github.com/ga4gh/workflow-execution-service-schemas) and submits bioinformatic workflows implemented with Snakemake or Nextflow into our high-throughput cluster. The One-Touch Pipeline (OTP) is a metadata management and workflow orchestration or meta-workflow management system specialized on biological high-throughput data. Our short-term goal is to let OTP submit and manage all workflow executions via WESkit. The long-term goal is to develop WESkit into a standalone workflow execution service for the research community, including its interaction with other GA4GH standards (https://www.ga4gh.org/our-products/#), such as TES, TRS, or DRS.
Your main activities will be:
Work in a small team on making WESkit production ready
Communicate with and support the OTP team in WESkit's installation, interfaces, and operation
Qualifikationen:
The following skills are particularly important for this position:
Python, including typed Python using Mypy, Celery, Flask
Teamwork and communication, including working in a distributed team
Agile software development, e.g. SCRUM
Container technologies, in particular Docker and Singularity
The following topics are relevant and experience in them is considered a bonus:
Software design and architecture
Object-oriented design patterns
Building robust, scalable, usable, production-quality software
Workflow management systems, in particular Snakemake and Nextflow
High-throughput cluster systems, in particular IBM LSF and SLURM
Kubernetes, Helm
OAuth2
Java, Groovy, Grails, Hibernate, Spring, Gradle (OTP software stack)
Knowledge of bioinformatics is not required, but you should be motivated to understand the domain.
The applicant must hold a university degree (including of applied sciences) in computer science, or a related field. Excellent communication and organization skills and proficiency in English are mandatory.
Berufsfeld
Öffentlicher Dienst, Verwaltung
Informationstechnologie, TK
IT/TK Softwareentwicklung
Softwareentwicklung
Standorte